Ehm.. yeah.. i guess this combines a lot of issues.
Since it makes minecraft nearly unplayable since i need the glitches to switch off all the time.. eh.
I could acutally reduce the issue to a simple behaviour:

• With the Door opening - glitches (i can see through the earth, wood, stone etc)

• With the Door closing - glitches ( same as above)
• with slabs being pushed ( the ones u use in npc village for tables ) - glitches (same as above)

• with lava bubbling (sound might also cause this) - glitches (same as above)

• with water (werent there bubbles too?) -> glitches
  (might be because in the line of view viallgers opened doors or such)

• with placing blocks - the world sometimes glitches ( see through any block)

• with mining blocks - the world sometimes glitches ( see through any)

• well.. i am not sure.. but with picking up items it sometimes glitches

• > i did not test more animated objects.. cause... hell i couldnt even come to mine right.. so what should i say.. ... i really dont like to look through everything

-> i think this has to do too with the problem of saving temporarily mined objects. ( like the respawn of the just slayed pumpkin - thought i keep the drop now.. ?)

• i use optifine... and as simple as that.. just optifine.