java.io.IOException: Bad file descriptor
at java.io.RandomAccessFile.seek(Native Method)
at aoy.a(SourceFile:308)
at aoy.a(SourceFile:251)
at aoz.close(SourceFile:232)
at java.util.zip.DeflaterOutputStream.close(DeflaterOutputStream.java:143)
at java.io.FilterOutputStream.close(FilterOutputStream.java:143)
at apb.a(SourceFile:145)
at apb.c(SourceFile:133)
at ayi.b(SourceFile:30)
at ayi.run(SourceFile:23)
at java.lang.Thread.run(Thread.java:680)

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NOTE:

Please do not link to 'http://256.com/gray/docs/misc/java_bad_file_descriptor_close_bug.shtml' and claim that this is 'a bug in Java'. That bug was patched back in 2007 for Java 1.5, whereas I am running 1.6.

Please also do not mark this as a duplicate of 46338.

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I see this error a LOT when messing around in SSP. It appears immediately after 'Saving chunks for level', about 15% of the times I run the program (121 out of 843). I've yet to notice any world or player data corruption. There's no rhyme or reason for when it happens vs not, and I can't reproduce it on demand. IIRC this also used to happen on 1.6.x (but I can't verify that at the moment). I've verified that my disk is OK via both DiskUtility and SMART.

Note: I'm using a custom java console log divert thing to see these. These errors are trapped from Minecraft's output stream, but Minecraft itself apparently does not write them into its own logs. Given this and that the error mentions zip, I'm guessing the problem lies somewhere with archiving and shuffling the logs around.